One lineage, side by side
Every structure here was aligned onto IsPETase 6EQE when it was written, so these panels are already in register: rotating one rotates all of them, and the same view means the same orientation in every panel. The catalytic triad is drawn in yellow and substituted residues in pink, using the residues the geometry stage measured rather than positions inferred from an alignment.
The question this asks, which the catalogue cannot: do stabilising mutations keep clear of the catalytic machinery, or do some crowd it? Every substituted residue carries its side-chain distance to the nearest triad side chain, measured once from these coordinates. The wild types group asks a different question with the same machinery: those are natural enzymes from unrelated organisms that nobody has engineered, so what varies between them is what evolution did rather than what a protein engineer did.
Structures with no assigned lineage · 49–60 of 534
ACS:6832bc63e1
ESMFold prediction, pLDDT 93 · cleft 19.5 Å
ACS:6861c6518c
ESMFold prediction, pLDDT 95 · cleft 19.9 Å
ACS:69ab7616cf
ESMFold prediction, pLDDT 91 · cleft 23.6 Å
ACS:6e1d475c44
ESMFold prediction, pLDDT 91 · cleft 24.5 Å
ACS:706a47299a
ESMFold prediction, pLDDT 89 · cleft 19.8 Å
ACS:7244775a70
ESMFold prediction, pLDDT 89 · cleft 25.8 Å
ACS:737cb3b5d6
ESMFold prediction, pLDDT 91 · cleft 21.5 Å
ACS:74896d2453
ESMFold prediction, pLDDT 89 · cleft 20.4 Å
ACS:7501848573
ESMFold prediction, pLDDT 88 · cleft 20.4 Å
ACS:7568d50d91
ESMFold prediction, pLDDT 88 · cleft 22.9 Å
ACS:7767524b01
ESMFold prediction, pLDDT 87 · cleft 20.8 Å
ACS:77d35cc4a6
ESMFold prediction, pLDDT 92 · cleft 19.1 Å
Distances are side chain to side chain, excluding backbone atoms. Measured any-atom to any-atom they came out at 1.31–1.35 Å for four variants, which is a peptide bond rather than a contact: those residues simply sit next to a triad residue in sequence. Where a substituted residue is adjacent in sequence it is marked, so a short distance that only reflects the fold's connectivity is visible as such. Panels built from predictions carry the loops that gate the cleft at lower confidence than the crystal structures beside them; a distance measured on one is weaker evidence than the same distance measured on the other.
Sequences one per panel above, in the same order
catalytic triad substitution against the lineage wild type · triad positions are labelled; hover any residue for its number. Click one to select it in its panel above, or click a residue in a panel to find it here.